{"id":674,"date":"2023-04-10T13:14:42","date_gmt":"2023-04-10T13:14:42","guid":{"rendered":"https:\/\/terrabioappdev.wpenginepowered.com\/why-the-new-and-improved-wdl-docs-deserve-a-second-look\/"},"modified":"2023-12-27T04:55:54","modified_gmt":"2023-12-27T04:55:54","slug":"why-the-new-and-improved-wdl-docs-deserve-a-second-look","status":"publish","type":"post","link":"https:\/\/terra.bio\/why-the-new-and-improved-wdl-docs-deserve-a-second-look\/","title":{"rendered":"Why the new and improved WDL docs deserve a second look"},"content":{"rendered":"<p><span style=\"font-weight: 400;\">Have you ever found yourself (desperately?) searching for WDL (Workflow Description Language) documentation that suits your needs and coming up short? I have. I was in that boat a year ago when I joined the Broad. I had never heard of WDL before, but I was starting to document WDL scripts for the Pipeline Development team, so I needed to learn quickly. In my search, I found several resources that I would later realize are quite helpful. But at that time I was looking for something really basic to get me started and what I was finding felt a bit too advanced. My team, User Education, created some great basic resources a number of years ago, but unfortunately, they had become out of date.\u00a0<\/span><\/p>\n<p><span style=\"font-weight: 400;\">I remember being really frustrated; the only resources that seemed geared toward beginners weren&#8217;t usable because they hadn\u2019t been updated in years. And I\u2019m not the only person who felt this way. In July 2022, a survey of workflow users in Terra revealed that more than 75% were very interested or somewhat interested in learning more about coding in WDL and 50% have used or wanted to use those introductory materials to learn WDL, but weren\u2019t able to because the documentation was outdated. Users also told us they wanted to see more tutorials and example workflows. Without these resources, they were left with limited options for learning WDL.<\/span><\/p>\n<p><span style=\"font-weight: 400;\">It\u2019s because of that user feedback and my own experience that I\u2019m especially excited to announce that my team recently finished a total overhaul of the introductory WDL materials.\u00a0 The updated resources include:<\/span><\/p>\n<ul>\n<li style=\"font-weight: 400;\" aria-level=\"1\"><span style=\"font-weight: 400;\">A new <\/span><a href=\"https:\/\/github.com\/openwdl\/wdl-docs\/tree\/main\" target=\"_blank\" rel=\"noopener\"><span style=\"font-weight: 400;\">wdl-docs GitHub repository<\/span><\/a><span style=\"font-weight: 400;\"> with a section dedicated to <\/span><a href=\"https:\/\/github.com\/openwdl\/wdl-docs\/tree\/main\/docs\/community\" target=\"_blank\" rel=\"noopener\"><span style=\"font-weight: 400;\">resources created by the WDL community<\/span><\/a><span style=\"font-weight: 400;\">.<\/span><\/li>\n<li style=\"font-weight: 400;\" aria-level=\"1\"><span style=\"font-weight: 400;\">A new <\/span><a href=\"https:\/\/wdl-docs.readthedocs.io\/en\/latest\/\" target=\"_blank\" rel=\"noopener\"><span style=\"font-weight: 400;\">wdl-docs website<\/span><\/a><span style=\"font-weight: 400;\"> to host the documentation from the new wdl-docs GitHub repository.<\/span><\/li>\n<li style=\"font-weight: 400;\" aria-level=\"1\"><span style=\"font-weight: 400;\">Updates to all existing WDL syntax documentation to match the <\/span><a href=\"https:\/\/github.com\/openwdl\/wdl\/blob\/main\/versions\/1.0\/SPEC.md\" target=\"_blank\" rel=\"noopener\"><span style=\"font-weight: 400;\">WDL 1.0 spec<\/span><\/a><span style=\"font-weight: 400;\">. You can now find the docs on the new wdl-docs GitHub repository.<\/span><\/li>\n<li style=\"font-weight: 400;\" aria-level=\"1\"><span style=\"font-weight: 400;\">17 new articles, 11 <\/span><a href=\"https:\/\/wdl-docs.readthedocs.io\/en\/latest\/WDL\/chain_tasks_together\/\" target=\"_blank\" rel=\"noopener\"><span style=\"font-weight: 400;\">cookbook-style docs<\/span><\/a><span style=\"font-weight: 400;\"> to teach users about specific use-cases and provide example workflows and 6 <\/span><a href=\"https:\/\/wdl-docs.readthedocs.io\/en\/latest\/community\/best_practices_pipelines_team\/\" target=\"_blank\" rel=\"noopener\"><span style=\"font-weight: 400;\">best practices docs<\/span><\/a><span style=\"font-weight: 400;\"> to help users understand some of the grayer areas of coding in WDL, like what to consider when trying to optimize costs. Thanks to the Pipelines Development team for help developing these resources.<\/span><\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<p><span style=\"font-weight: 400;\">We hope this documentation will be useful to both new and more experienced WDL users, but also that the WDL community will help us continue to improve the documentation. The wdl-docs repository and website work best with community contributions! If you have a fix you\u2019d like to make, a new doc you\u2019d like to contribute or suggest, or a resource you\u2019d like to highlight, please do so! You can check out the Home page of the <\/span><a href=\"https:\/\/wdl-docs.readthedocs.io\/en\/latest\/\" target=\"_blank\" rel=\"noopener\"><span style=\"font-weight: 400;\">wdl-docs website<\/span><\/a><span style=\"font-weight: 400;\"> or the <\/span><a href=\"https:\/\/github.com\/openwdl\/wdl-docs\/blob\/main\/CONTRIBUTING.md\" target=\"_blank\" rel=\"noopener\"><span style=\"font-weight: 400;\">contributing guide<\/span><\/a><span style=\"font-weight: 400;\"> to read about the contribution process.<\/span><\/p>\n<p><b>Additional Resources<\/b><\/p>\n<p><span style=\"font-weight: 400;\">If you want to get started using WDL on Terra, check out our <\/span><a href=\"https:\/\/leanpub.com\/universities\/courses\/terra\/pipelining\" target=\"_blank\" rel=\"noopener\"><span style=\"font-weight: 400;\">Intro to workflows on Terra Leanpub course<\/span><\/a><span style=\"font-weight: 400;\"> or our <\/span><a href=\"https:\/\/support.terra.bio\/hc\/en-us\/articles\/9612163744923-T101-Workflows-Quickstart-Guide\" target=\"_blank\" rel=\"noopener\"><span style=\"font-weight: 400;\">T101 &#8211; Workflows Quickstart Guide<\/span><\/a><span style=\"font-weight: 400;\"> and the accompanying <\/span><a href=\"https:\/\/app.terra.bio\/#workspaces\/help-terra\/T101-Workflows-Quickstart\" target=\"_blank\" rel=\"noopener\"><span style=\"font-weight: 400;\">workspace<\/span><\/a><span style=\"font-weight: 400;\">.<\/span><\/p>\n<p><span style=\"font-weight: 400;\">You can also check out the <\/span><a href=\"https:\/\/www.youtube.com\/watch?v=u5hqgNPvBlk&amp;list=PLh_zJaZ9uQ7MfFTM7UP58VfPvT5Dhis6P&amp;index=4\" target=\"_blank\" rel=\"noopener\"><span style=\"font-weight: 400;\">recording<\/span><\/a><span style=\"font-weight: 400;\">, <\/span><a href=\"https:\/\/drive.google.com\/drive\/folders\/14YB0bACeaAl1XYyiyhjZJ8yyrfvlMkhv\"><span style=\"font-weight: 400;\">materials<\/span><\/a><span style=\"font-weight: 400;\">, and the <\/span><a href=\"https:\/\/app.terra.bio\/#workspaces\/help-gatk\/WDL-puzzles\"><span style=\"font-weight: 400;\">WDL-puzzles workspace<\/span><\/a><span style=\"font-weight: 400;\"> from a previous WDL workshop where participants learned how to write a basic WDL workflow, bring the workflow into a Terra workspace, and run the workflow in Terra.<\/span><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Have you ever found yourself (desperately?) searching for WDL (Workflow Description Language) documentation that suits your needs and coming up short? I have. I was in that boat a year ago when I joined the Broad. I had never heard of WDL before, but I was starting to document WDL scripts for the Pipeline Development [&hellip;]<\/p>\n","protected":false},"author":48,"featured_media":669,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_acf_changed":false,"footnotes":""},"categories":[53,38,39,32,40],"tags":[],"class_list":["post-674","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-getting-started","category-tutorials","category-videos","category-workflows","category-workshops"],"acf":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v27.0 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>Why the new and improved WDL docs deserve a second look - Terra<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/terra.bio\/why-the-new-and-improved-wdl-docs-deserve-a-second-look\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Why the new and improved WDL docs deserve a second look - Terra\" \/>\n<meta property=\"og:description\" content=\"Have you ever found yourself (desperately?) searching for WDL (Workflow Description Language) documentation that suits your needs and coming up short? 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